PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009622296.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 165aa    MW: 19136.3 Da    PI: 4.3534
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009622296.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.58e-3481201121
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++PwdL+ k+ ae ++wyf+s+r +        +r+t +gyWk+ g d++++s+
  XP_009622296.1   8 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLDGKAMAEGNKWYFYSRRTQ--------SRITGNGYWKSLGLDEPIFSS 93 
                     79*************************999.99**************977778899******9854........799****************99 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdW 121
                      ++++vg+kk  +fy g++p+g+kt+W
  XP_009622296.1  94 sSENKVGMKKYYAFYIGEQPEGVKTNW 120
                     67788********************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-425131IPR003441NAC domain
PROSITE profilePS5100537.6378154IPR003441NAC domain
PfamPF023658.1E-189120IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MGDNNVNLPP GFRFYPTDEE LVVHFLHRKA ALLPCHPDVI PDLDLYPYDP WDLDGKAMAE  60
GNKWYFYSRR TQSRITGNGY WKSLGLDEPI FSSSSENKVG MKKYYAFYIG EQPEGVKTNW  120
DYSKWVICRV HERNCDNDDD DGTELSCLDE VFLSLDDLDE ISLPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-35414113156NO APICAL MERISTEM PROTEIN
1ut4_B7e-35414113156NO APICAL MERISTEM PROTEIN
1ut7_A7e-35414113156NO APICAL MERISTEM PROTEIN
1ut7_B7e-35414113156NO APICAL MERISTEM PROTEIN
3swm_A8e-35414116159NAC domain-containing protein 19
3swm_B8e-35414116159NAC domain-containing protein 19
3swm_C8e-35414116159NAC domain-containing protein 19
3swm_D8e-35414116159NAC domain-containing protein 19
3swp_A8e-35414116159NAC domain-containing protein 19
3swp_B8e-35414116159NAC domain-containing protein 19
3swp_C8e-35414116159NAC domain-containing protein 19
3swp_D8e-35414116159NAC domain-containing protein 19
4dul_A7e-35414113156NAC domain-containing protein 19
4dul_B7e-35414113156NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754407e-55HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622296.11e-121PREDICTED: NAC transcription factor 25 isoform X2
RefseqXP_016435090.11e-121PREDICTED: NAC domain-containing protein 104-like isoform X2
SwissprotQ8GWK62e-83NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A068TMB61e-102A0A068TMB6_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000764813e-92(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-73xylem NAC domain 1